Journal Publications

Evolutionary trajectories of duplicated FT homologues and their roles in soybean domestication

F Wu, EJ Sedivy, WB Price, W Haider, Y Hanzawa

The Plant Journal 90 (5), 941–953

 

Soybean domestication: the origin, genetic architecture and molecular bases

EJ Sedivy, F Wu, Y Hanzawa

New Phytologist 214 (2), 539-553

 

The FLOWERING LOCUS T / TERMINAL FLOWER 1 Gene Family: Functional Evolution and Molecular Mechanisms

Wickland, D.P. and Hanzawa, Y

Molecular Plant, v.8, 2015, p. 983.

 

The level, timing and spatial pattern of TFL1 expression affects Arabidopsis flowering architecture

Baumann K., Venail, J., Berbel, A., Domenech, A.J., Money, T., Conti, L., Hanzawa, Y., Madueno, F. and Bradley, D.

Journal of Experimental Botany, v.66, 2015, p. 4769.

 

Functional and Evolutionary Characterization of the CONSTANS Gene Family in Short-Day Photoperiodic Flowering in Soybean

F Wu, BW Price, W Haider, G Seufferheld, R Nelson, Y Hanzawa

PloS one 9 (1), e85754

 

Achieving exact cluster recovery threshold via semidefinite programming

B. Hajek, Y. Wu, and J. Xu

IEEE Transactions on Information Theory. 2016, 62  2788.

 

Achieving exact cluster recovery threshold via semidefinite programming: extensions.

B. Hajek, Y. Wu, and J. Xu

IEEE Transactions on Information Theory, 2016

 

A New Correlation Clustering Method for Cancer Mutation Analysis

J. Hou, A. Emad, G. Puleo, J. Ma, and O. Milenkovic

Bioinformatics, 2016

 

Correlation Clustering with Bounded Cluster Sizes and New Weight Bounds

Puleo, G. and Milenkovic, O

SIAM Journal on Optimization. 2015, 25 (3),  1857.

 

Separate elements of the TERMINAL FLOWER 1 cis-regulatory region integrate pathways to control flowering time and shoot meristem identity

Serrano-Mislata, A., Fernández-Nohales, P., Doménech, M.J., Hanzawa, Y., Bradley, D. and Madueño, F.

Development, 2016

Juried Conference Papers

B. Hajek, Y. Wu, and J. Xu (2016). Information limits for recovering a hidden community. IEEE International Symposium on Information Theory, 2016.

B. Hajek, Y. Wu, and J. Xu (2016). Semidefinite programs for exact recovery of a hidden community. Proceedings Conf. on Learning Theory (COLT), 2016.

G. Puleo and O. Milenkovic (2016). Correlation Clustering and Biclustering with Locally Bounded Errors. ICML, 2016.

H. Dau, O. Milenkovic (2016). Latent Feature Discovery and Co-Intersection Representations of Graphs. ISIT, 2016.

Other Conference Presentations

Faqiang Wu, Eric J. Sedivy, Daniel P. Wickland, William B. Price, Waseem Haider and Yoshie Hanzawa (2016). The evolution of FT homologs and its roles in soybean domestication. Soy2016: Molecular and Cellular Biology of the Soybean 16th Biennial Conference. Columbus OH.

 

Sedivy, E., Nasarudin, N.S., Maniero, R., Han, M. and Hanzawa, Y. (2016). Association mapping of temperature response in agronomically important traits in soybean. Soy2016: Molecular and Cellular Biology of the Soybean 16th Biennial Conference. Columbus OH.

 

Serrata, A., Haider, W., Mei, Y., Emad, A, Gregis, V., Kamater, M., Bradley, D., Alon, U., Milenkovic, O., Madueño, F. and Hanzawa, Y. (2015). Paradoxical feedback circuits fine-tune the flowering gene network. Workshop on Mechanisms Controlling Flower Development. Aiguablava, Spain.

 

Sedivy, E.J., Mei, Y., Donahue, J., Nakamura, Y., Teo, N.Z.W., Wenk, M.R., Ito, T., Bradley, D., Gillaspy, G. and Hanzawa, Y. (2015). Phospholipid signaling modulates flowering time controlled by TFL1 in Arabidopsis. Workshop on Mechanisms Controlling Flower Development. Aiguablava, Spain.