Links

Reference

 

A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network

Leal Valentim F, Mourik Sv, Posé D, Kim MC, Schmid M, van Ham RC, Busscher M, Sanchez-Perez GF, Molenaar J, Angenent GC, Immink RG, van Dijk AD.

PLoS One. 2015 Feb 26;10(2):e0116973.

 

A model comparison study of the flowering time regulatory network in Arabidopsis

Wang CC, Chang PC, Ng KL, Chang CM, Sheu PC, Tsai JJ.

BMC Syst Biol. 2014 Feb 11;8:15.

 

Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network

Misra A, Sriram G.

BMC Syst Biol. 2013 Nov 14;7:126.

 

Interlocking feedback loops govern the dynamic behavior of the floral transition in Arabidopsis

Jaeger KE, Pullen N, Lamzin S, Morris RJ, Wigge PA.

Plant Cell. 2013 Mar;25(3):820-33.

 

Simple network motifs can capture key characteristics of the floral transition in Arabidopsis

Pullen N, Jaeger KE, Wigge PA, Morris RJ.

Plant Signal Behav. 2013 Nov;8(11):e26149.

 

Gene regulatory network models for floral organ determination

Azpeitia E, Davila-Velderrain J, Villarreal C, Alvarez-Buylla ER.

Methods Mol Biol. 2014;1110:441-69.

 

A data-driven integrative model of sepal primordium polarity in Arabidopsis

La Rota C, Chopard J, Das P, Paindavoine S, Rozier F, Farcot E, Godin C, Traas J, Monéger F.

Plant Cell. 2011 Dec;23(12):4318-33.

 

Modeling and simulating the Arabidopsis thaliana circadian clock using XPP-AUTO

Schmal C, Leloup JC, Gonze D.

Methods Mol Biol. 2014;1158:337-58.

 

Multi-level modeling of light-induced stomatal opening offers new insights into its regulation by drought

Sun Z, Jin X, Albert R, Assmann SM.

PLoS Comput Biol. 2014 Nov 13;10(11):e1003930.

 

A Dynamic Gene Regulatory Network Model That Recovers the Cyclic Behavior of Arabidopsisthaliana Cell Cycle

Ortiz-Gutiérrez E, García-Cruz K, Azpeitia E, Castillo A, Sánchez Mde L, Álvarez-Buylla ER.

PLoS Comput Biol. 2015 Sep 4;11(9):e1004486.

 

Finding Missing Interactions of the Arabidopsis thaliana Root Stem Cell Niche Gene Regulatory Network

Azpeitia E, Weinstein N, Benítez M, Mendoza L, Alvarez-Buylla ER.

Front Plant Sci. 2013 Apr 30;4:110.